ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR396
source: microPC, original name: miR396
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GTTCAAGAAAACTGTGGGA mismatches: 1 bulges: 0 |
pre-miRNA
TTCCACAGCTTTCTTGAACTTTACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAAGTTCAAGAAAACTGTGGGA
dot-bracket secondary structure
((((((((.((((((((((((((..(((...(((((.((((((....)))))).))))))))..)))))))))))))).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTCCACAGCTTTCTTGAACTTTACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAAGTTCAAGAAAACTGTGGGA
dot-bracket secondary structure
((((((((.((((((((((((((..(((...(((((.((((((....)))))).))))))))..)))))))))))))).))))))))
SIMILARITIES| miRBase pta-MIR396: 3e-44 PMRD pta-miR396: 3e-44 microPC miR396: 3e-44 | UniProt no hits RFAM MIR396: 1e-40 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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