ABOUT THIS RECORDspecies: Brassica rapa
source: microPC, original name: miR854
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATGAGGAGAGGGACGAGGA miRNA* CTCCGTCGCTTCCGAACTCAACCC mismatches: 3 bulges: 4 |
pre-miRNA
TCCTCCGTCGCTTCCGAACTCAACCCCTCCACCGGCGTCGTCGTACCACCAATCGTCTCCGTCATCTAACGGTCGGCGGTGGAAACAGAAGCTGGTATGG
GATGAGGAGAGGGACGAGGA
dot-bracket secondary structure
(((((.(((.((((....((((.(((....((((((.((......(((((..(((...((((......)))).))).))))).....)).))))))..))
).))))..))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TCCTCCGTCGCTTCCGAACTCAACCCCTCCACCGGCGTCGTCGTACCACCAATCGTCTCCGTCATCTAACGGTCGGCGGTGGAAACAGAAGCTGGTATGG
GATGAGGAGAGGGACGAGGA
dot-bracket secondary structure
(((((.(((.((((....((((.(((....((((((.((......(((((..(((...((((......)))).))).))))).....)).))))))..))
).))))..))))))))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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