ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR812
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGACGGATAGTTAAAGTTGGACA miRNA* mismatches: 5 bulges: 1 |
pre-miRNA
CCAATGTTTGACCGTCCGTTTTATTTGAAAAAATTATAAAAAAAATAAAAAGACAAGTCATGCACAAAGTATTAATCATGTTTTATCATCTAACAACAAT
AAAAATACGAATTATAAAAAAATTTCATATAAGACGGATAGTTAAAGTTGGACA
dot-bracket secondary structure
(((((.((((((..((((((((((.(((((...((((((............((....)).........(((((.....(((((((.....))).))))..
...)))))...)))))).....))))).))))))))))..)))))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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CCAATGTTTGACCGTCCGTTTTATTTGAAAAAATTATAAAAAAAATAAAAAGACAAGTCATGCACAAAGTATTAATCATGTTTTATCATCTAACAACAAT
AAAAATACGAATTATAAAAAAATTTCATATAAGACGGATAGTTAAAGTTGGACA
dot-bracket secondary structure
(((((.((((((..((((((((((.(((((...((((((............((....)).........(((((.....(((((((.....))).))))..
...)))))...)))))).....))))).))))))))))..)))))))))))...
SIMILARITIES| miRBase osa-MIR812o: 4e-17 PMRD osa-miRf11382-akr: 6e-22 microPC miR812: 2e-24 | UniProt no hits RFAM MIR812: 1e-29 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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