ABOUT THIS RECORDspecies: Catharanthus roseus
source: microPC, original name: miR169
Taxonomy by NCBI:
Catharanthus roseus Catharanthus Vinceae Rauvolfioideae Apocynaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCCAAGGATGACTTGCC miRNA* CAAGTTGTCTTTGGCT mismatches: 2 bulges: 0 |
pre-miRNA
AGCCAAGGATGACTTGCCGACTGTTTTGCCGAGCGCGGAAATAAAATGCAGCTTTCTCTCTCTCTCTCTCTGTATATTTGCCGCCGTACGTATTTATACG
AACTCCTCGGCAAGTTGTCTTTGGCT
dot-bracket secondary structure
(((((((((..(((((((((..............(((((((((...(((((..................)))))))))).)))).((.((((....))))
.))...)))))))))..)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGCCAAGGATGACTTGCCGACTGTTTTGCCGAGCGCGGAAATAAAATGCAGCTTTCTCTCTCTCTCTCTCTGTATATTTGCCGCCGTACGTATTTATACG
AACTCCTCGGCAAGTTGTCTTTGGCT
dot-bracket secondary structure
(((((((((..(((((((((..............(((((((((...(((((..................)))))))))).)))).((.((((....))))
.))...)))))))))..)))))))))
SIMILARITIES| miRBase vvi-MIR169g: 0.00002 PMRD vvi-miR169g: 0.00002 microPC miR169: 6e-37 | UniProt no hits RFAM MIR169_2: 0.0001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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