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ABOUT THIS RECORD

ID: MNEST046632
species: Brassica rapa
miRNA family: MIR157
source: microPC, original name: miR157

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGATAGAGAGCAC

miRNA*
 GCTCTCTATACTTCTGTCA

mismatches: 1
bulges: 1
View larger
pre-miRNA
 TGACAGAAGATAGAGAGCACTAAGGATGACATGCAAGTACATACATATATATCATCACACCGCAAGTGGATATAAGGAAATTCAAGAAAGAGAGGAAAAA
AGAGCCTGCATCTCTACTCTTTTGTGCTCTCTATACTTCTGTCA

dot-bracket secondary structure
.(((((((((((((((((((.(((((.((.(((((.((.(.......((((((..(((.......)))))))))......(((......)))........
.).)).))))).))...))))).))))))))))).)))))))).


SIMILARITIES
miRBase bna-MIR156c: 1e-35

PMRD bna-miR156c: 1e-35

microPC miR157: 4e-78		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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