ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
source: microPC, original name: miR393
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATCGCATTGATCT miRNA* ATCATGCGATCCCTTAGGA mismatches: 1 bulges: 1 |
pre-miRNA
TCCAAAGGGATCGCATTGATCTAATGACTCTCGATGTCTAAATCATATTAATGTTTAGTTTTTTCGTTGGATCATGCGATCCCTTAGGA
dot-bracket secondary structure
(((.((((((((((((.((((((((((.....((...(((((.(((....))))))))...)))))))))))))))))))))))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCCAAAGGGATCGCATTGATCTAATGACTCTCGATGTCTAAATCATATTAATGTTTAGTTTTTTCGTTGGATCATGCGATCCCTTAGGA
dot-bracket secondary structure
(((.((((((((((((.((((((((((.....((...(((((.(((....))))))))...)))))))))))))))))))))))).)))
SIMILARITIES| miRBase ptc-MIR393c: 2e-45 PMRD ptc-miR393c: 2e-45 microPC miR393: 2e-45 | UniProt no hits RFAM no hits |
Identical with: ptc-MIR393c from miRBase (MNEST041419) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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