ABOUT THIS RECORDspecies: Citrus clementina
source: microPC, original name: miR168
Taxonomy by NCBI:
Citrus clementina Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGA miRNA* CCGCCTTGCATCAACTGA mismatches: 2 bulges: 0 |
pre-miRNA
TCGCTTGGTGCAGGTCGGGAACTGATTGGCTAGTTTTTTTTTGAAATTTTTTGACAGCGAGGTGGCGTGTTGTAATTGGTCGTCACGTTTAAATTAATGA
TTGAAAAAAATGCGAATTGGATCCCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.(((((.(..(((.((....(((((((..(.(((..((...((((.(..(((............)))..).))))..))..)))..
)..))))))).)).)))..).))))).)))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCGCTTGGTGCAGGTCGGGAACTGATTGGCTAGTTTTTTTTTGAAATTTTTTGACAGCGAGGTGGCGTGTTGTAATTGGTCGTCACGTTTAAATTAATGA
TTGAAAAAAATGCGAATTGGATCCCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.(((((.(..(((.((....(((((((..(.(((..((...((((.(..(((............)))..).))))..))..)))..
)..))))))).)).)))..).))))).)))))))))).)))
SIMILARITIES| miRBase crt-MIR168: 1e-32 PMRD rco-miR168: 0.0000000001 microPC miR168: 1e-32 | UniProt no hits RFAM MIR168: 0.0000000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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