ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR446
source: microPC, original name: miR446
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATCAATATGAATATGGGAAA miRNA* TCCTAGTTCATATTAATGTT mismatches: 2 bulges: 1 |
pre-miRNA
TTCCTAGTTCATATTAATGTTAATGAATCTAGACATATATATCTAGCTAGATTCATTAACATCAATATGAATATGGGAAA
dot-bracket secondary structure
(((((((((((((((.((((((((((((((((...((......)).)))))))))))))))).))))))))).)))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTCCTAGTTCATATTAATGTTAATGAATCTAGACATATATATCTAGCTAGATTCATTAACATCAATATGAATATGGGAAA
dot-bracket secondary structure
(((((((((((((((.((((((((((((((((...((......)).)))))))))))))))).))))))))).)))))).
SIMILARITIES| miRBase osa-MIR808: 2e-26 PMRD osa-miR808: 2e-26 microPC miR809: 3e-22 | UniProt no hits RFAM MIR1122: 9e-26 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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