ABOUT THIS RECORDspecies: Brassica napus
source: microPC, original name: miR160
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCTGGCTCCCTGTATGCC miRNA* CGTACAGAGTAGTCAAGC mismatches: 2 bulges: 1 |
pre-miRNA
GCCTGGCTCCCTGTATGCCACAAGTAAATACCGATCTCATTATGAAATCGGACACTAGTGGCGTACAGAGTAGTCAAGC
dot-bracket secondary structure
((.(((((.((((((((((((.(((.....(((((.((.....)).)))))..))).))))))))))).).))))).))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GCCTGGCTCCCTGTATGCCACAAGTAAATACCGATCTCATTATGAAATCGGACACTAGTGGCGTACAGAGTAGTCAAGC
dot-bracket secondary structure
((.(((((.((((((((((((.(((.....(((((.((.....)).)))))..))).))))))))))).).))))).))
SIMILARITIES| miRBase aly-MIR160b: 0.000000000000001 PMRD ath-miRf10238-akr: 0.0000000000002 microPC miR160: 1e-39 | UniProt no hits RFAM mir-160: 2e-38 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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