ABOUT THIS RECORDspecies: Tamarix hispida
source: microPC, original name: miR169
Taxonomy by NCBI:
Tamarix hispida Tamarix Tamaricaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCT miRNA* GCAGTCTCCTTGGCTA mismatches: 0 bulges: 2 |
pre-miRNA
TAGCCAAGGATGACTTGCCTACTCTTCTTTTCATCGTGGTAGTGAATCACCATGTAGGGGTAGGTAGGCAGTCTCCTTGGCTA
dot-bracket secondary structure
((((((((((.((((.(((((((..(((((.(((.(((((.....))))).))).)))))..)))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TAGCCAAGGATGACTTGCCTACTCTTCTTTTCATCGTGGTAGTGAATCACCATGTAGGGGTAGGTAGGCAGTCTCCTTGGCTA
dot-bracket secondary structure
((((((((((.((((.(((((((..(((((.(((.(((((.....))))).))).)))))..)))))))))))))))))))))
SIMILARITIES| miRBase sly-MIR169d: 0.000004 PMRD sly-miR169d: 0.000004 microPC miR169: 6e-42 | UniProt no hits RFAM MIR169_5: 0.0003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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