ABOUT THIS RECORDspecies: Festuca arundinacea
source: microPC, original name: miR160
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCTGGCTCCCTGTATGCCA miRNA* GCGTGCAAGGTGCCAAGC mismatches: 3 bulges: 0 |
pre-miRNA
GCCTGGCTCCCTGTATGCCACACATGTAGCCCAACCCAAGAATGTGGTTGCCTGCTGTGGGTGGCGTGCAAGGTGCCAAGC
dot-bracket secondary structure
((.((((.((.((((((((((.(((((((..(((((((....)).))))).)))).))).)))))))))).)).)))).))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GCCTGGCTCCCTGTATGCCACACATGTAGCCCAACCCAAGAATGTGGTTGCCTGCTGTGGGTGGCGTGCAAGGTGCCAAGC
dot-bracket secondary structure
((.((((.((.((((((((((.(((((((..(((((((....)).))))).)))).))).)))))))))).)).)))).))
SIMILARITIES| miRBase bdi-MIR160c: 2e-29 PMRD sbi-miR160a: 3e-22 microPC miR160: 9e-41 | UniProt no hits RFAM mir-160: 5e-21 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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