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ABOUT THIS RECORD
ID:
MNEST046653
species:
Oryza sativa
source:
microPC, original name:
miR171
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGTGCCAATATCT
miRNA*
ATGTTGGCTCGGCTCACTCAGA
mismatches:
3
bulges:
0
View larger
pre-miRNA
G
ATGTTGGCTCGGCTCACTCAGA
CGGCATTGGCGTGATGCAAAGCATGCATGCGTGCTTGCTACCTCACTTGTGTTTC
TGATTGAGCCGTGCCAATATCT
dot-bracket secondary structure
(
((((((((.(((((((.(((((
.(((((....((((.((((.(((((....)))))))))....))))..)))))))
))).))))))).))))))))).
SIMILARITIES
miRBase
osa-MIR171e
:
1e-49
PMRD
osa-miR171e
:
1e-49
microPC
miR171
:
5e-52
UniProt
no hits
RFAM
MIR171_1: 2e-48
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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