ABOUT THIS RECORDspecies: Populus tremula
miRNA family: MIR159
source: microPC, original name: miR159
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GAGCTCCTTGAAGTCCAATAG mismatches: 3 bulges: 0 |
pre-miRNA
TGGAGCTCCTTGAAGTCCAATAGAAGCTCCTGCTGGGTAGATCGAGCTGCTGAGCTATGAATCCCACAGCCCTATCACCATCTGTTATTTTGACGGGCCT
GCGGCTTGCATATCTCAGGAGCTTTATTACCTAATGTTGGATCTTTTTTTGGATTGAAGGGAGCTCTA
dot-bracket secondary structure
(((((((((((..(((((((.(((((.(((.(((((((((...(((((.(((((.((((....((.(((.((..(((.............)))..)).))
).))....)))).))))).)))))..)))))))..)).))).))))).)))))))..)))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGGAGCTCCTTGAAGTCCAATAGAAGCTCCTGCTGGGTAGATCGAGCTGCTGAGCTATGAATCCCACAGCCCTATCACCATCTGTTATTTTGACGGGCCT
GCGGCTTGCATATCTCAGGAGCTTTATTACCTAATGTTGGATCTTTTTTTGGATTGAAGGGAGCTCTA
dot-bracket secondary structure
(((((((((((..(((((((.(((((.(((.(((((((((...(((((.(((((.((((....((.(((.((..(((.............)))..)).))
).))....)))).))))).)))))..)))))))..)).))).))))).)))))))..)))))))))))
SIMILARITIES| miRBase ptc-MIR159b: 3e-70 PMRD ptc-miR159b: 3e-70 microPC miR159: 8e-80 | UniProt no hits RFAM MIR159: 3e-67 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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