miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST046660
species: Hordeum vulgare
miRNA family: MIR166
source: microPC, original name: miR166

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCC

miRNA*
 AATGTTGTCTGGCTCGGGG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 GGAATGTTGTCTGGCTCGGGGTTCTCTTTCTTTCTCTCTCTCTCTATCTTCCTCCCCTCGGTCGATCCCTCCATGATCAGATCAAAGATCCGATGAGGGG
GGAGAGGAGAGTGAACGTGCGTAGATCTCGGACCAGGCTTCATTCC

dot-bracket secondary structure
((((((..((((((..(((((((..(...(.(((.(((((.((((......(((((((((...((((.......)))).((((...))))...)))))))
))))))))))).))).)...)..)))))))..))))))..))))))


SIMILARITIES
miRBase zma-MIR166a: 0.0000001

PMRD zma-miR166a: 0.0000001

microPC miR166: 2e-52		UniProt no hits

RFAM mir-166: 4e-51

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record




Liczniki na strone;