ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR168
source: microPC, original name: miR168
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAC miRNA* CCCGCCTTGCATCAACTGA mismatches: 2 bulges: 0 |
pre-miRNA
ATCGCTTGGTGCAGGTCGGGACCTGCCTCGCCGGCGACAATGACGTCAGCTGACGGTGACGGTGGCGTATCGATAGATATACATGTTGTTTATGACGAAAT
TTTGGTCCCGCCTTGCATCAACTGA
dot-bracket secondary structure
)(((.((((((((((.(((((((.....(((((.((.((....((((....)))).)).)).)))))..((((((((((.......)))))))..)))...
...))))))).)))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATCGCTTGGTGCAGGTCGGGACCTGCCTCGCCGGCGACAATGACGTCAGCTGACGGTGACGGTGGCGTATCGATAGATATACATGTTGTTTATGACGAAAT
TTTGGTCCCGCCTTGCATCAACTGA
dot-bracket secondary structure
)(((.((((((((((.(((((((.....(((((.((.((....((((....)))).)).)).)))))..((((((((((.......)))))))..)))...
...))))))).)))))))))).)))
SIMILARITIES| miRBase sbi-MIR168: 2.0E-5 PMRD stu-miR168: 3.0E-14 microPC miR168: 8.0E-67 | UniProt no hits RFAM 8MIR168: 0.0004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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