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ABOUT THIS RECORD

ID: MNEST046668
species: Populus tremula x Populus tremuloides
miRNA family: MIR397
source: microPC, original name: miR397

Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTGAGTGCAGCGTTGATGA

miRNA*
 ACCAGCGCTGCATTCAAT

mismatches: 1
bulges: 0
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pre-miRNA
 ATTGAGTGCAGCGTTGATGAAATCCTACATTTTGTGCTCTTAAACTGTTACCAACCCTTTATCCATGGCATCATTTCACCAGCGCTGCATTCAAT

dot-bracket secondary structure
((((((((((((((((.((((((...(((.((((......)))).)))..(((............)))....)))))).))))))))))))))))


SIMILARITIES
miRBase ptc-MIR397a: 3e-35

PMRD ptc-miR397a: 3e-35

microPC miR397: 5e-49		UniProt no hits

RFAM MIR397: 1e-31

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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