ABOUT THIS RECORDspecies: Saccharum officinarum
source: microPC, original name: miR169
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCGG miRNA* GGCAGGTTCTTCTCTTTGGCTA mismatches: 1 bulges: 3 |
pre-miRNA
TAGCCAAGGATGACTTGCCGGCCGATGCCTCGATCGATCCCTCATCCCCGTCCGGCCGGGAACGTCGCACGTATGTATGTATGCGTGCATATGCTGCGAA
CTGTGAGGCATCCATATCGACCGGCAGGTTCTTCTCTTTGGCTA
dot-bracket secondary structure
((((((((((.((((((((((.((((((((((..............((((......))))....(((((((((((((((....)))))))))).))))).
...)))))))......))).))))))))))....))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TAGCCAAGGATGACTTGCCGGCCGATGCCTCGATCGATCCCTCATCCCCGTCCGGCCGGGAACGTCGCACGTATGTATGTATGCGTGCATATGCTGCGAA
CTGTGAGGCATCCATATCGACCGGCAGGTTCTTCTCTTTGGCTA
dot-bracket secondary structure
((((((((((.((((((((((.((((((((((..............((((......))))....(((((((((((((((....)))))))))).))))).
...)))))))......))).))))))))))....))))))))))
SIMILARITIES| miRBase ssp-MIR169: 3e-73 PMRD sof-miR169: 2e-61 microPC miR169: 4e-78 | UniProt no hits RFAM MIR169_2: 0.00000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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