ABOUT THIS RECORDspecies: Ricinus communis
source: microPC, original name: miR160
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCTGGCTCCCTGTATGCCA miRNA* GCGTATGAGGAGCCATGC mismatches: 3 bulges: 0 |
pre-miRNA
GCCTGGCTCCCTGTATGCCATTTGCAGAGCCCACCGGAGCATCGATGGCCTCCGTGGATGGCGTATGAGGAGCCATGC
dot-bracket secondary structure
((.(((((((..((((((((((..(.(((.(((.((......)).))).))).)..))))))))))..))))))).))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GCCTGGCTCCCTGTATGCCATTTGCAGAGCCCACCGGAGCATCGATGGCCTCCGTGGATGGCGTATGAGGAGCCATGC
dot-bracket secondary structure
((.(((((((..((((((((((..(.(((.(((.((......)).))).))).)..))))))))))..))))))).))
SIMILARITIES| miRBase vvi-MIR160e: 8e-32 PMRD vvi-miR160f: 8e-32 microPC miR160: 5e-39 | UniProt no hits RFAM mir-160: 1e-30 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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