ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR399
source: microPC, original name: miR399
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTGCCC miRNA* GTATATCTCCTTTGGCACG mismatches: 2 bulges: 0 |
pre-miRNA
GGGTATATCTCCTTTGGCACGGAGGCACGCAACCATCCGTAGGTATGTTAATGGATGGTGGCAAGCTGCTGGCTTGGAAGATGCAGCATAATAGCCGTGC
GTGCCAAAGGAGAATTGCCC
dot-bracket secondary structure
(((((..((((((((((((((.((((..((.(((((((((..........))))))))).))..(((((...((....))..)))))......))).).)
)))))))))))))..)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGTATATCTCCTTTGGCACGGAGGCACGCAACCATCCGTAGGTATGTTAATGGATGGTGGCAAGCTGCTGGCTTGGAAGATGCAGCATAATAGCCGTGC
GTGCCAAAGGAGAATTGCCC
dot-bracket secondary structure
(((((..((((((((((((((.((((..((.(((((((((..........))))))))).))..(((((...((....))..)))))......))).).)
)))))))))))))..)))))
SIMILARITIES| miRBase tae-MIR399: 0.000000006 PMRD tae-miR399: 0.000000006 microPC miR399: 8e-64 | UniProt no hits RFAM mir-399: 0.000007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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