ABOUT THIS RECORDspecies: Nicotiana langsdorffii x Nicotiana sanderae
source: microPC, original name: miR156
Taxonomy by NCBI:
Nicotiana langsdorffii x Nicotiana sanderae Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACAGAAGAGAGTGAGCAC miRNA* GCTCACTTCTCTTTCTGTC mismatches: 0 bulges: 2 |
pre-miRNA
CGACAGAAGAGAGTGAGCACACGCACACAATTGTATACAGTGTATACTTTTGTGTTTATATTATTTGCGTGTGCTCACTTCTCTTTCTGTC
dot-bracket secondary structure
)(((((((((((((((((((((((((((((..((((((...))))))..))))))...........)))))))))))).)))).)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGACAGAAGAGAGTGAGCACACGCACACAATTGTATACAGTGTATACTTTTGTGTTTATATTATTTGCGTGTGCTCACTTCTCTTTCTGTC
dot-bracket secondary structure
)(((((((((((((((((((((((((((((..((((((...))))))..))))))...........)))))))))))).)))).)))))))
SIMILARITIES| miRBase tcc-MIR156c: 2.0E-8 PMRD stu-miR156a: 3.0E-7 microPC miR156: 4.0E-46 | UniProt no hits RFAM 6mir-156: 3.0E-7 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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