ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR169
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCCAAGGATGACTTGCC miRNA* CAAGTTGTTCTTGGCT mismatches: 2 bulges: 0 |
pre-miRNA
AGCCAAGGATGACTTGCCGATCGATCGATCTATCTATGAAGCTAAGCTAGCTGGCCATGGATCCATCCATCAATTGGCAAGTTGTTCTTGGCT
dot-bracket secondary structure
(((((((((..((((((((((.(((.(((..(((((((.(((((...)))))...)))))))..))).))).))))))))))..)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGCCAAGGATGACTTGCCGATCGATCGATCTATCTATGAAGCTAAGCTAGCTGGCCATGGATCCATCCATCAATTGGCAAGTTGTTCTTGGCT
dot-bracket secondary structure
(((((((((..((((((((((.(((.(((..(((((((.(((((...)))))...)))))))..))).))).))))))))))..)))))))))
SIMILARITIES| miRBase osa-MIR169a: 7e-48 PMRD osa-miR169a: 7e-48 microPC miR169: 7e-48 | UniProt no hits RFAM MIR169_2: 1e-46 |
Identical with: osa-miR169a from PMRD (MNEST048876) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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