ABOUT THIS RECORDspecies: Prunus persica
source: microPC, original name: miR408
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGC miRNA* CAGGGAACAGGTAGAGCATG mismatches: 4 bulges: 0 |
pre-miRNA
GACAGGGAACAGGTAGAGCATGGATGGAGTTCCCAACAGAAAAATAGAGCTGTTGTGGCTCTACTCATGCACTGCCTCTTCCCTGGC
dot-bracket secondary structure
..(((((((.((((((.(((((..(((((((..((((((..........)))))).)))))))..))))).)))))).)))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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GACAGGGAACAGGTAGAGCATGGATGGAGTTCCCAACAGAAAAATAGAGCTGTTGTGGCTCTACTCATGCACTGCCTCTTCCCTGGC
dot-bracket secondary structure
..(((((((.((((((.(((((..(((((((..((((((..........)))))).)))))))..))))).)))))).)))))))..
SIMILARITIES| miRBase ptc-MIR408: 0.000000001 PMRD ppe-miR408: 3e-44 microPC miR408: 3e-44 | UniProt no hits RFAM MIR408: 0.0000000000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
