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ABOUT THIS RECORD
ID:
MNEST046729
species:
Populus tremula x Populus tremuloides
source:
microPC, original name:
miR396
Taxonomy by NCBI:
Populus tremula x Populus tremuloides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAAC
miRNA*
TCAATAAAGCTGTGGGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
TTCCACAGCTTTCTTGAAC
TGCACCTATTAGATTTATGTTGATGTTGTTGTGCGATTTGCCATGACCATATGACATTGTATTCATTTTTGCTGCGGT
TCA
ATAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((.((((((
((((.(.....((...(((((.((((.((..((.(.....)))..)).))))))))).....))......).))))))
)))
).))))))))))))
SIMILARITIES
miRBase
ptc-MIR396b
:
2e-55
PMRD
ptc-miRf10257-akr
:
2e-55
microPC
miR396
:
3e-60
UniProt
no hits
RFAM
MIR396: 3e-54
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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