ABOUT THIS RECORDspecies: Lactuca virosa
miRNA family: MIR171
source: microPC, original name: miR171
Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGAATGGCTCAATCAAA mismatches: 1 bulges: 0 |
pre-miRNA
GATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
((((((((.(((((((((((((((.(((.(.(((.(..........).))).).))).))))))))))))))).))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
((((((((.(((((((((((((((.(((.(.(((.(..........).))).).))).))))))))))))))).))))))))
SIMILARITIES| miRBase vvi-MIR171i: 0.0000000003 PMRD vvi-miR171i: 0.0000000003 microPC miR171: 2e-41 | UniProt no hits RFAM MIR171_1: 0.000000004 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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