ABOUT THIS RECORDspecies: Lactuca virosa
miRNA family: MIR171
source: microPC, original name: miR171
Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGAATGGCTCAATCAAA mismatches: 1 bulges: 0 |
pre-miRNA
CGATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
)((((((((.(((((((((((((((.(((.(.(((.(..........).))).).))).))))))))))))))).))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
CGATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
)((((((((.(((((((((((((((.(((.(.(((.(..........).))).).))).))))))))))))))).))))))))
SIMILARITIES| miRBase vvi-MIR171i: 3.0E-10 PMRD vvi-miR171i: 3.0E-10 microPC miR171: 2.0E-41 | UniProt no hits RFAM 1MIR171_1: 4.0E-9 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
