ABOUT THIS RECORDspecies: Vigna unguiculata
source: microPC, original name: miR319
Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGAGCTCCC miRNA* GAGCTTTCTTCAGTCCACTC mismatches: 5 bulges: 0 |
pre-miRNA
GTGAGCTTTCTTCAGTCCACTCATAGGTGGCAGTAAGATTCAATTAGCTGCCGACTCATTCATCCAAATGCTGAGTAGTGATACTCTTAAAGATACTCAT
CAAATGAGTGAATGATGCGGGAGACAAATTGATTCTTAAGTTTCCTGTACTTGGACTGAAGGGAGCTCCC
dot-bracket secondary structure
..(((((..((((((((((...(((((..((..(((((.((((((.(((.(((..(((((((..((..((.((((((.(((.....)))....)))))).
))..))..)))))))..))).)).).)))))).))))).))..)))))...))))))))))..)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
GTGAGCTTTCTTCAGTCCACTCATAGGTGGCAGTAAGATTCAATTAGCTGCCGACTCATTCATCCAAATGCTGAGTAGTGATACTCTTAAAGATACTCAT
CAAATGAGTGAATGATGCGGGAGACAAATTGATTCTTAAGTTTCCTGTACTTGGACTGAAGGGAGCTCCC
dot-bracket secondary structure
..(((((..((((((((((...(((((..((..(((((.((((((.(((.(((..(((((((..((..((.((((((.(((.....)))....)))))).
))..))..)))))))..))).)).).)))))).))))).))..)))))...))))))))))..)))))..
SIMILARITIES| miRBase gma-MIR319a: 4e-54 PMRD gma-miR319a: 4e-54 microPC miR319: 2e-93 | UniProt no hits RFAM MIR159: 1e-39 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
