miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST046779
species: Nicotiana tabacum
source: microPC, original name: miR159

Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGATCGAAGGGAGCTCT

miRNA*
AGCTCCTTGAAGTCCAACA

mismatches: 3
bulges: 0

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pre-miRNA
TGGAGCTCCTTGAAGTCCAACAGAGGATCTAACAGGTAAGATTAAGCTGCTGACCTATGGATTCCTCAGTCCTATCTATTATTTGATAGGATAGGTAAGTG
GGTAGCATATGTCAGGAGCTACATTACCCTAAGTTGGATCGCTTATTGGATCGAAGGGAGCTCT


dot-bracket secondary structure
)((((((((((...((((((..(((((((((((.(((((.....((((.(((((.((((...(((((.((((((((........)))))))).)).....)
))...)))).))))).))))...)))))....)))))))).))).))))))...))))))))))



SIMILARITIES
miRBase sly-MIR159: 2.0E-22

PMRD sly-miR159: 2.0E-22

microPC miR159: 6.0E-90
UniProt no hits

RFAM 9MIR159: 2.0E-28

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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