ABOUT THIS RECORDspecies: Citrus reticulata
miRNA family: MIR171
source: microPC, original name: miR171
Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TATTGGTGCGGTTCAATAAGA mismatches: 3 bulges: 0 |
pre-miRNA
GATATTGGTGCGGTTCAATAAGAAAACGGTGCTCAATACTTTTTGAGCTCCGCTTTTTGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
((((((((..(((((((((.(((((.(((.((((((......)))))).))).))))).)))))))))..))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GATATTGGTGCGGTTCAATAAGAAAACGGTGCTCAATACTTTTTGAGCTCCGCTTTTTGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
((((((((..(((((((((.(((((.(((.((((((......)))))).))).))))).)))))))))..))))))))
SIMILARITIES| miRBase crt-MIR171: 5e-39 PMRD vvi-miR171c: 6e-17 microPC miR171: 5e-39 | UniProt no hits RFAM MIR171_1: 3e-16 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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