ABOUT THIS RECORDspecies: Cichorium intybus
source: microPC, original name: miR156
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCA miRNA* CTCACTTCTCTTGCTGTCA mismatches: 1 bulges: 2 |
pre-miRNA
TGACAGAAGAGAGTGAGCATATGCAAACAATTGTATAGAGAGGTATACACTTGTAAATATGCGTGTGCTCACTTCTCTTGCTGTCA
dot-bracket secondary structure
.((((((((((((((((((((((((.((((.((((((......)))))).)))).....))))))))))))).)))))).))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGACAGAAGAGAGTGAGCATATGCAAACAATTGTATAGAGAGGTATACACTTGTAAATATGCGTGTGCTCACTTCTCTTGCTGTCA
dot-bracket secondary structure
.((((((((((((((((((((((((.((((.((((((......)))))).)))).....))))))))))))).)))))).))))).
SIMILARITIES| miRBase osa-MIR156l: 0.00006 PMRD vvi-miR156d: 0.00006 microPC miR156: 2e-42 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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