ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR809
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATGTGGGAAATGTTAGAAT miRNA* TCTATCATTTCCCACATTCA mismatches: 1 bulges: 0 |
pre-miRNA
ATTCTATCATTTCCCACATTCATATTAATGTTAATGAATCTAGATAGATATATATGTTTAGATTCATTAACATCAATATAAATCAATATAAATGTGGGAA
ATGTTAGAAT
dot-bracket secondary structure
((((((.(((((((((((((.(((((.(((((((((((((((((((........)))))))))))))))))))...........))))).))))))))))
))).))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
ATTCTATCATTTCCCACATTCATATTAATGTTAATGAATCTAGATAGATATATATGTTTAGATTCATTAACATCAATATAAATCAATATAAATGTGGGAA
ATGTTAGAAT
dot-bracket secondary structure
((((((.(((((((((((((.(((((.(((((((((((((((((((........)))))))))))))))))))...........))))).))))))))))
))).))))))
SIMILARITIES| miRBase osa-MIR808: 7e-30 PMRD osa-miR808: 7e-30 microPC miR809: 4e-25 | UniProt no hits RFAM MIR1122: 1e-31 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
