ABOUT THIS RECORDspecies: Vigna unguiculata
miRNA family: MIR319
source: microPC, original name: miR319
Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGAGCTCCCT miRNA* TGAGCTTTCTTCAGTCCACTC mismatches: 4 bulges: 0 |
pre-miRNA
AGTGAGCTTTCTTCAGTCCACTCATAGGTGGCAGTAAGATTCAATTAGCTGCCGACTCATTCATCCAAATGCTGAGTAGTGATACTCTTAAAGATACTCA
TCAAATGAGTGAATGATGCGGGAGACAAATTGATTCTTAAGTTTCCTGTACTTGGACTGAAGGGAGCTCCCT
dot-bracket secondary structure
((.(((((..((((((((((...(((((..((..(((((.((((((.(((.(((..(((((((..((..((.((((((.(((.....)))....))))))
.))..))..)))))))..))).)).).)))))).))))).))..)))))...))))))))))..))))).))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGTGAGCTTTCTTCAGTCCACTCATAGGTGGCAGTAAGATTCAATTAGCTGCCGACTCATTCATCCAAATGCTGAGTAGTGATACTCTTAAAGATACTCA
TCAAATGAGTGAATGATGCGGGAGACAAATTGATTCTTAAGTTTCCTGTACTTGGACTGAAGGGAGCTCCCT
dot-bracket secondary structure
((.(((((..((((((((((...(((((..((..(((((.((((((.(((.(((..(((((((..((..((.((((((.(((.....)))....))))))
.))..))..)))))))..))).)).).)))))).))))).))..)))))...))))))))))..))))).))
SIMILARITIES| miRBase gma-MIR319a: 1e-54 PMRD gma-miR319a: 1e-54 microPC miR319: 2e-93 | UniProt no hits RFAM MIR159: 2e-40 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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