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ABOUT THIS RECORD
ID:
MNEST046826
species:
Oryza sativa
source:
microPC, original name:
miR171
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGTGCCAATAT
miRNA*
GTTGGCTCGGCTCACTCAGA
mismatches:
2
bulges:
0
View larger
pre-miRNA
AT
GTTGGCTCGGCTCACTCAGA
CGGCATTGGCGTGATGCAAAGCATGCATGCGTGCTTGCTACCTCACTTGTGTTTC
TGATTGAGCCGTGCCAATAT
dot-bracket secondary structure
((
((((((.(((((((.(((((
.(((((....((((.((((.(((((....)))))))))....))))..)))))))
))).))))))).))))))))
SIMILARITIES
miRBase
osa-MIR171e
:
8e-48
PMRD
osa-miR171n
:
8e-48
microPC
miR171
:
3e-50
UniProt
no hits
RFAM
MIR171_1: 1e-46
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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