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ABOUT THIS RECORD
ID:
MNEST046828
species:
Raphanus raphanistrum subsp raphanistrum
source:
microPC, original name:
miR159
SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTCT
miRNA*
GGCTCCTTATAGTTCAAAC
mismatches:
1
bulges:
0
View larger
pre-miRNA
AG
GGCTCCTTATAGTTCAAAC
GAGAGTTTAGCGGGGTAAAGAAAAGCTGCTAAGCTATGGATACCATAAGCCCTAATCCTTGTATTGAAAAAGGACTTGG
TAATATGGCTTGCATATCTCAGGAGCTTTAACTTACCCTTTAATTGCTTTTACTCTTCT
TTGGATTGAAGGGAGCTCT
dot-bracket secondary structure
((
((((((((.(((((((((.
((((((..((((((((((...((((((.((.((.((((.(..(((((...((...(((((.........)))))...))
...)))))..).)))).)).)).))))))...)))))))......)))...)))))).)
)))))))).))))))))))
SIMILARITIES
miRBase
bra-MIR159a
:
2e-74
PMRD
bra-miR159a
:
2e-74
microPC
miR159
:
3e-98
UniProt
no hits
RFAM
MIR159: 8e-59
Identical with:
miR319
from microPC (
MNEST046710
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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