ABOUT THIS RECORDspecies: Populus trichocarpa
source: microPC, original name: miR1444
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACATTCGGTCAACGTTC miRNA* ATATTGATCGAATATGTA mismatches: 3 bulges: 0 |
pre-miRNA
GAATATTGATCGAATATGTATGAAATATGATGGTTATATGTTTCATTCACATTCGGTCAACGTTC
dot-bracket secondary structure
(((..((((((((((.((.((((((((((.......)))))))))).)).))))))))))..)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAATATTGATCGAATATGTATGAAATATGATGGTTATATGTTTCATTCACATTCGGTCAACGTTC
dot-bracket secondary structure
(((..((((((((((.((.((((((((((.......)))))))))).)).))))))))))..)))
SIMILARITIES| miRBase ptc-MIR1444b: 2e-31 PMRD ptc-miR1444b: 2e-31 microPC miR1444: 6e-29 | UniProt no hits RFAM MIR1444: 4e-30 |
Identical with: ptc-MIR1444b from miRBase (MNEST041513) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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