ABOUT THIS RECORDspecies: Allium cepa
miRNA family: MIR171
source: PMRD, original name: ace-miR170b
Taxonomy by NCBI:
Allium cepa Allium Allieae Allioideae Amaryllidaceae Asparagales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATC miRNA* GGAGGAGCGAAATAGAG mismatches: 10 bulges: 3 |
pre-miRNA
CATAAAAGGAGGAGCGAAATAGAGGCTTCCCTATGATAGGTTGAGAAGGGAAGCATTGATTGAGCCGCGCCAATATC
dot-bracket secondary structure
).........((.(((.(((....((((((((..............))))))))....)))....))).))......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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CATAAAAGGAGGAGCGAAATAGAGGCTTCCCTATGATAGGTTGAGAAGGGAAGCATTGATTGAGCCGCGCCAATATC
dot-bracket secondary structure
).........((.(((.(((....((((((((..............))))))))....)))....))).))......
SIMILARITIES| miRBase sly-MIR171c: 1.0E-5 PMRD sly-miR171c: 1.0E-5 microPC miR171: 0.0002 | UniProt no hits RFAM 1MIR171_1: 0.0002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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