ABOUT THIS RECORDspecies: Arachis hypogaea
miRNA family: MIR157
source: PMRD, original name: ahy-miR157k
Taxonomy by NCBI:
Arachis hypogaea Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGAGAGAGAGCAC miRNA* GCTCTCTACTCTTCTGTCATCA mismatches: 1 bulges: 1 |
pre-miRNA
CCTCGAAGAGATTATAAATGTTGACAGAAGAGAGAGAGCACAACCCGAGAAATGGTCAAAGAATCTTTTACCTTTGTTGGGAGTGTGCTCTCTACTCTTC
TGTCATCATCTTTATCTTTATTTGTATGGTATAGATCTT
dot-bracket secondary structure
((.(((((((((.....(((.(((((((((((((((((((((.(((((.(((.(((.((((...)))).)))))).)))))..)))))))))).))))))
))))).)))....)))))..))))...))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CCTCGAAGAGATTATAAATGTTGACAGAAGAGAGAGAGCACAACCCGAGAAATGGTCAAAGAATCTTTTACCTTTGTTGGGAGTGTGCTCTCTACTCTTC
TGTCATCATCTTTATCTTTATTTGTATGGTATAGATCTT
dot-bracket secondary structure
((.(((((((((.....(((.(((((((((((((((((((((.(((((.(((.(((.((((...)))).)))))).)))))..)))))))))).))))))
))))).)))....)))))..))))...))..........
SIMILARITIES| miRBase ahy-MIR156c: 4e-75 PMRD gma-miR156b: 0.00000000000003 microPC miR157: 7e-43 | UniProt no hits RFAM mir-156: 0.0000000000001 |
Identical with: miR156 from microPC (MNEST046790) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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