ABOUT THIS RECORDspecies: Aquilegia coerulea
miRNA family: MIR166
source: PMRD, original name: aqc-miR166a
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCTC miRNA* GGGGATGTTGTCTGTTTCGAGG mismatches: 3 bulges: 1 |
pre-miRNA
TGAGGGGGGATGTTGTCTGTTTCGAGGTCATTTAGAGATTTGATTCTTCTAAATGGAGTGTATTTTTATTGAATTCTAAATGACCTCGGACCAGGCTTCA
TTCCTCTCAGC
dot-bracket secondary structure
((((((((.(((..(((((.(((((((((((((((((.((..((.((((.....)))).........))..))))))))))))))))))).)))))..))
)))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Puzey JR, Kramer EM, Gene. 448:46-56(2009)., "Identification of conserved Aquilegia coerulea microRNAs and their targets"
TGAGGGGGGATGTTGTCTGTTTCGAGGTCATTTAGAGATTTGATTCTTCTAAATGGAGTGTATTTTTATTGAATTCTAAATGACCTCGGACCAGGCTTCA
TTCCTCTCAGC
dot-bracket secondary structure
((((((((.(((..(((((.(((((((((((((((((.((..((.((((.....)))).........))..))))))))))))))))))).)))))..))
)))))))))..
SIMILARITIES| miRBase aqc-MIR166a: 2e-58 PMRD vvi-miR166b: 0.000001 microPC miR166: 0.000005 | UniProt no hits RFAM mir-166: 0.000006 |
Identical with: aqc-MIR166a from miRBase (MNEST041167) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Puzey JR, Kramer EM, Gene. 448:46-56(2009)., "Identification of conserved Aquilegia coerulea microRNAs and their targets"
