ABOUT THIS RECORDspecies: Aquilegia coerulea
miRNA family: MIR166
source: PMRD, original name: aqc-miR166e
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGTTCGAGG mismatches: 3 bulges: 0 |
pre-miRNA
TTGAGAGGAATGTTGTCTGGTTCGAGGCCACTAACTTAACAACTCTTAATTGAAACTCAATCTATAACCGGTTAGCAAGTGAAAGCGCTTGCGCTCGCTG
GTGTTTGTTTGTTTGTGTCGTCGGACCAGGCTTCATTCCCCTCAATT
dot-bracket secondary structure
(((((.((((((..(((((((((((.(.(((.(((..(((((......((((.....)))).....((((((..(((((((....)))))))....))))
))..))))).))).))).).)))))))))))..)))))).)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Puzey JR, Kramer EM, Gene. 448:46-56(2009)., "Identification of conserved Aquilegia coerulea microRNAs and their targets"
TTGAGAGGAATGTTGTCTGGTTCGAGGCCACTAACTTAACAACTCTTAATTGAAACTCAATCTATAACCGGTTAGCAAGTGAAAGCGCTTGCGCTCGCTG
GTGTTTGTTTGTTTGTGTCGTCGGACCAGGCTTCATTCCCCTCAATT
dot-bracket secondary structure
(((((.((((((..(((((((((((.(.(((.(((..(((((......((((.....)))).....((((((..(((((((....)))))))....))))
))..))))).))).))).).)))))))))))..)))))).)))))..
SIMILARITIES| miRBase aqc-MIR166e: 7e-80 PMRD vvi-miR166c: 0.0000000005 microPC miR166: 0.00000003 | UniProt no hits RFAM mir-166: 0.00000003 |
Identical with: aqc-MIR166e from miRBase (MNEST041171) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Puzey JR, Kramer EM, Gene. 448:46-56(2009)., "Identification of conserved Aquilegia coerulea microRNAs and their targets"
