ABOUT THIS RECORDspecies: Aquilegia coerulea
miRNA family: MIR169
source: PMRD, original name: aqc-miR169c
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTTGTCCTTCGGCTACA mismatches: 3 bulges: 1 |
pre-miRNA
AATGCAGCCAAGGATGACTTGCCGGAACGTTGTTAACCATGCATATGAATAATGTGATGATTAATTATGTGATGAACATATTTCTGGCAAGTTGTCCTTC
GGCTACATTTT
dot-bracket secondary structure
((((.(((((((((..(((((((((((...((((...(((.(((((((.((((......)))).))))))))))))))...)))))))))))..))))).
)))).))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Puzey JR, Kramer EM, Gene. 448:46-56(2009)., "Identification of conserved Aquilegia coerulea microRNAs and their targets"
AATGCAGCCAAGGATGACTTGCCGGAACGTTGTTAACCATGCATATGAATAATGTGATGATTAATTATGTGATGAACATATTTCTGGCAAGTTGTCCTTC
GGCTACATTTT
dot-bracket secondary structure
((((.(((((((((..(((((((((((...((((...(((.(((((((.((((......)))).))))))))))))))...)))))))))))..))))).
)))).))))..
SIMILARITIES| miRBase aqc-MIR169c: 2e-58 PMRD ath-miRf10574-akr: 2e-58 microPC miR169: 0.00002 | UniProt no hits RFAM MIR169_2: 3e-57 |
Identical with: ath-miRf10861-akr from PMRD (MNEST047961) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Puzey JR, Kramer EM, Gene. 448:46-56(2009)., "Identification of conserved Aquilegia coerulea microRNAs and their targets"
