ABOUT THIS RECORDspecies: Aquilegia coerulea
miRNA family: MIR398
source: PMRD, original name: aqc-miR398b
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGGGTAACATGAGAATACATG mismatches: 4 bulges: 0 |
pre-miRNA
GGGGGTAACATGAGAATACATGAAATAGATACTATCAGAGAGTCATTCCATTGTAGTATCAGTTTCTTCCATGTGTTCTCAGGTCGCCCCTGC
dot-bracket secondary structure
(((((..((.((((((((((((((((.(((((((.(((.(........).)))))))))).)))))....))))))))))).))..)))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Puzey JR, Kramer EM, Gene. 448:46-56(2009)., "Identification of conserved Aquilegia coerulea microRNAs and their targets"
GGGGGTAACATGAGAATACATGAAATAGATACTATCAGAGAGTCATTCCATTGTAGTATCAGTTTCTTCCATGTGTTCTCAGGTCGCCCCTGC
dot-bracket secondary structure
(((((..((.((((((((((((((((.(((((((.(((.(........).)))))))))).)))))....))))))))))).))..)))))..
SIMILARITIES| miRBase aqc-MIR398b: 7e-48 PMRD vvi-miR398c: 0.000001 microPC miR398: 0.000004 | UniProt no hits RFAM MIR398: 0.000001 |
Identical with: aqc-MIR398b from miRBase (MNEST041191) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Puzey JR, Kramer EM, Gene. 448:46-56(2009)., "Identification of conserved Aquilegia coerulea microRNAs and their targets"
