ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10026-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCGACCTCGGGGTCGAGTGGT miRNA* CACTCGACCTCGTGGTCGAGTGA mismatches: 2 bulges: 0 |
pre-miRNA
GTGAAGACACTCGACCTCGTGGTCGAGTGATGTGATCGAGTGATGGTCAAGTGATGGGGATGAAGACACTCGACCTCGTGGTCGAGTGATGTGATGAAAT
CGAGAAGCCCTCTACTCGACCTGGGGGTCGAGTGGTCTCTTGAGATCTTGAAGATCCTACTCGACCTCGGGGTCGAGTGGTTTGAC
dot-bracket secondary structure
((.(((.((((((((((((.((((((((....((((((.....)))))).......(((((.....(((((((((....))))))))).......((..(
(((((..((....((((((((....))))))))))..))))))..))......))))))))))))).)))))))))))).))).))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
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GTGAAGACACTCGACCTCGTGGTCGAGTGATGTGATCGAGTGATGGTCAAGTGATGGGGATGAAGACACTCGACCTCGTGGTCGAGTGATGTGATGAAAT
CGAGAAGCCCTCTACTCGACCTGGGGGTCGAGTGGTCTCTTGAGATCTTGAAGATCCTACTCGACCTCGGGGTCGAGTGGTTTGAC
dot-bracket secondary structure
((.(((.((((((((((((.((((((((....((((((.....)))))).......(((((.....(((((((((....))))))))).......((..(
(((((..((....((((((((....))))))))))..))))))..))......))))))))))))).)))))))))))).))).))
SIMILARITIES| miRBase no hits PMRD ath-miRf10217-akr: 5e-63 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10665-akr from PMRD (MNEST047765) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
