ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10057-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATGGTCAGATCCGTCATCCCACTTA miRNA* AGCGGGATGATGAATCCGACCATGATG mismatches: 3 bulges: 0 |
pre-miRNA
GAGAGGCTATAAGCGGGATGATGAATCCGACCATGATGGTGTTGCAGAAATTTATGTATGATGTAGTTATTGTCCAGGGATCGAAACACCATCATGGTCA
GATCCGTCATCCCACTTATGTTTTCTT
dot-bracket secondary structure
((((((.((((((.(((((((((.(((.(((((((((((((((...((..((..((.(..(((....)))..).))..))))..))))))))))))))).
))).))))))))).)))))).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GAGAGGCTATAAGCGGGATGATGAATCCGACCATGATGGTGTTGCAGAAATTTATGTATGATGTAGTTATTGTCCAGGGATCGAAACACCATCATGGTCA
GATCCGTCATCCCACTTATGTTTTCTT
dot-bracket secondary structure
((((((.((((((.(((((((((.(((.(((((((((((((((...((..((..((.(..(((....)))..).))..))))..))))))))))))))).
))).))))))))).)))))).))))))
SIMILARITIES| miRBase ath-MIR842: 5e-68 PMRD ath-miR842: 5e-68 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR842 from PMRD (MNEST047071) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
