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ABOUT THIS RECORD
ID:
MNEST047160
species:
Arabidopsis thaliana
source:
PMRD, original name:
ath-miRf10060-akr
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCCGGAGGGATTCCTTCCTT
miRNA*
GGGTGGACTCCTTTTGGATG
mismatches:
2
bulges:
0
View larger
pre-miRNA
CCAAATGGA
GGGTGGACTCCTTTTGGATG
TTGTAATCAGCGAGTGTGCGACCGTCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGA
TCCGGAGG
GATTCCTTCCTT
ATCCTGG
dot-bracket secondary structure
(((....((
(((.(((.((((((((((..
......(((((.((.(.((....(((((...((((.....)))).)))))..))).)))))))
))))))))
)).))).)))))
....)))
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|Q9FHQ6|UBQ9_ARATH: 8e-16
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
degradome data
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