ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10065-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGGTGGAATCTCTCCGGTGA miRNA* TCCGGTGGGATTTCTCCGGCG mismatches: 3 bulges: 0 |
pre-miRNA
TCCGATCTCCGGTGGGATTTCTCCGGCGATGTTGTTGTACCAAGCTATGAATTGCTCGAGTTTCTGGAGGTTTCCGATCTCCGGTGGGATTGTACCGTTG
AGATAATTGAGACTGAGATCAATCGTTCGTAGCTCAGAGCATTGAGATATCGCCGGTGGAATCTCTCCGGTGACGAGA
dot-bracket secondary structure
..((.((.((((.((((((((.(((((((((((..(((.(..((((((((((..(((.((((((.((......)).((((((((((......)))))..)
))))....))))))))).......))))))))))..).)))....))))))))))).)))))))).)))).))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TCCGATCTCCGGTGGGATTTCTCCGGCGATGTTGTTGTACCAAGCTATGAATTGCTCGAGTTTCTGGAGGTTTCCGATCTCCGGTGGGATTGTACCGTTG
AGATAATTGAGACTGAGATCAATCGTTCGTAGCTCAGAGCATTGAGATATCGCCGGTGGAATCTCTCCGGTGACGAGA
dot-bracket secondary structure
..((.((.((((.((((((((.(((((((((((..(((.(..((((((((((..(((.((((((.((......)).((((((((((......)))))..)
))))....))))))))).......))))))))))..).)))....))))))))))).)))))))).)))).))))...
SIMILARITIES| miRBase no hits PMRD ath-miRf10064-akr: 3e-98 microPC no hits | UniProt sp|Q9ZPS9|BRL2_ARATH: 2e-28 RFAM no hits |
Identical with: ath-miRf10710-akr from PMRD (MNEST047810) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
