ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10089-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTCGAGTGGTGACGTGAAGTG miRNA* AAGGTGATGAAGGTACTCGACCAC mismatches: 6 bulges: 2 |
pre-miRNA
GATCGAGTGAAGGTGATGAAGGTACTCGACCACGTGGTTGAGTAGTGTGATCGAGTGAAGGTGATGTGGTGGACGTGATGATACTCGACCAGGGGGTCGA
GTAATGTGATCGAGTGGTTGTCCAGGTGGTACTCGACCATGGGGTCGAGTGGTGACGTGAAGTGCTGAGGTC
dot-bracket secondary structure
((((.((((....(.(((..(.(((((((((.((((((((((((.(..(((((.......((.((((.....)))).))..(((((((((....))))))
)))...)))))...(((....)))...).)))))))))))).))))))))).)..))).)..))))..))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GATCGAGTGAAGGTGATGAAGGTACTCGACCACGTGGTTGAGTAGTGTGATCGAGTGAAGGTGATGTGGTGGACGTGATGATACTCGACCAGGGGGTCGA
GTAATGTGATCGAGTGGTTGTCCAGGTGGTACTCGACCATGGGGTCGAGTGGTGACGTGAAGTGCTGAGGTC
dot-bracket secondary structure
((((.((((....(.(((..(.(((((((((.((((((((((((.(..(((((.......((.((((.....)))).))..(((((((((....))))))
)))...)))))...(((....)))...).)))))))))))).))))))))).)..))).)..))))..))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10735-akr: 1e-84 microPC no hits | UniProt no hits RFAM MIR854: 0.00004 |
Identical with: ath-miRf10088-akr from PMRD (MNEST047188) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
