ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10100-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCGACCAGGGGGTCGAGTGGT miRNA* TACTTGACCACAGGGTCGAGTG mismatches: 5 bulges: 0 |
pre-miRNA
GATGATGATACTTGACCACAGGGTCGAGTGGTGGTGTGAAGTGATGAGGCCTTCTACTCGACCAGGGGGTCGAGTGGTTTGTT
dot-bracket secondary structure
((..(...(((((((((.(..((((((((((.(((.(.(.....).).)))..))))))))))..).)))))))))..)..))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GATGATGATACTTGACCACAGGGTCGAGTGGTGGTGTGAAGTGATGAGGCCTTCTACTCGACCAGGGGGTCGAGTGGTTTGTT
dot-bracket secondary structure
((..(...(((((((((.(..((((((((((.(((.(.(.....).).)))..))))))))))..).)))))))))..)..))
SIMILARITIES| miRBase no hits PMRD ath-miRf10099-akr: 9e-41 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
