ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10111-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGCGCTATCCATCCTGA miRNA* AGGAGGGATAGCGCCATGAT mismatches: 3 bulges: 0 |
pre-miRNA
AAGCTCAGGAGGGATAGCGCCATGATGATCACATTCGTTATCTATTTTTTGGCGCTATCCATCCTGAGTTT
dot-bracket secondary structure
((((((((((.(((((((((((.((((((.((....)).))).)))...))))))))))).))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
AAGCTCAGGAGGGATAGCGCCATGATGATCACATTCGTTATCTATTTTTTGGCGCTATCCATCCTGAGTTT
dot-bracket secondary structure
((((((((((.(((((((((((.((((((.((....)).))).)))...))))))))))).))))))))))
SIMILARITIES| miRBase ath-MIR390a: 7e-35 PMRD ath-miRf10112-akr: 7e-35 microPC miR390: 0.0000008 | UniProt no hits RFAM MIR390: 1e-33 |
Identical with: ath-miR390a from PMRD (MNEST046995) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
