ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10114-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATCATGCTATCTCTTTGGA miRNA* CAAAGGGATCGCATTGATCCT mismatches: 1 bulges: 1 |
pre-miRNA
GAGGAAGGATCCAAAGGGATCGCATTGATCCTAATTAAGGTGAATTCTCCCCATATTTTCTTTATAATTGGCAAATAAATCACAAAAATTTGCTTGGTTT
TGGATCATGCTATCTCTTTGGATTCATCCTT
dot-bracket secondary structure
(((((.((((((((((((((.((((.(((((.(((((.((.((....)).)).................(((((((...........)))))))))))).
.))))))))).)))))))))))))).)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
GAGGAAGGATCCAAAGGGATCGCATTGATCCTAATTAAGGTGAATTCTCCCCATATTTTCTTTATAATTGGCAAATAAATCACAAAAATTTGCTTGGTTT
TGGATCATGCTATCTCTTTGGATTCATCCTT
dot-bracket secondary structure
(((((.((((((((((((((.((((.(((((.(((((.((.((....)).)).................(((((((...........)))))))))))).
.))))))))).)))))))))))))).)))))
SIMILARITIES| miRBase ath-MIR393a: 2e-70 PMRD ath-miR393a: 2e-70 microPC miR393: 0.000006 | UniProt no hits RFAM no hits |
Identical with: ath-miR393a from PMRD (MNEST046998) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
