ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10136-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCGACCTGTTGGTCGAGTGG miRNA* ACTCGACCTCTAGGTAGAGTGAG mismatches: 5 bulges: 0 |
pre-miRNA
GGAGGTACTCGACCTCTAGGTAGAGTGAGGAGGTCGAGTGGTTGTCTGATGATGGAGGTGAAGACACTCGTCCTCATGGTCGAGTGAAGTGATCGAGTGA
CTGTCTGGTGATGAGATGATGGCACTCGACCTCGGGGTCGAGTGGTGGTTGAATTGGTGATGTCCTCTACTCGACCTGTTGGTCGAGTGGTCTCT
dot-bracket secondary structure
(..(.(((((((((..(((((.(((((((((.((((.....(..((....))..).........((((((.((((..(((((((((..((.(((..((.(
((....))).))..))).))..)))))))))..)))).)))))).............)))).))))).)))).)))))..))))))))).)..).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GGAGGTACTCGACCTCTAGGTAGAGTGAGGAGGTCGAGTGGTTGTCTGATGATGGAGGTGAAGACACTCGTCCTCATGGTCGAGTGAAGTGATCGAGTGA
CTGTCTGGTGATGAGATGATGGCACTCGACCTCGGGGTCGAGTGGTGGTTGAATTGGTGATGTCCTCTACTCGACCTGTTGGTCGAGTGGTCTCT
dot-bracket secondary structure
(..(.(((((((((..(((((.(((((((((.((((.....(..((....))..).........((((((.((((..(((((((((..((.(((..((.(
((....))).))..))).))..)))))))))..)))).)))))).............)))).))))).)))).)))))..))))))))).)..).
SIMILARITIES| miRBase no hits PMRD ath-miRf10133-akr: 2e-108 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10461-akr from PMRD (MNEST047561) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
