ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10149-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCCCTCGCAAATTTTGCGA miRNA* GCAAACATTGCGAGGGATTT mismatches: 2 bulges: 0 |
pre-miRNA
TCCATCGCAAACATTGCGAGGGATTTGCTACTACGAACGCTGGAACTTGCAACTCCCTCGCAGGTTTGCTACAGAAATATTCATTGCAAATCCCTCGCAA
ATTTTGCGAGGA
dot-bracket secondary structure
(((.(((((((..(((((((((((((((...........(((((((((((.........))))))))....)))...........)))))))))))))))
..))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
TCCATCGCAAACATTGCGAGGGATTTGCTACTACGAACGCTGGAACTTGCAACTCCCTCGCAGGTTTGCTACAGAAATATTCATTGCAAATCCCTCGCAA
ATTTTGCGAGGA
dot-bracket secondary structure
(((.(((((((..(((((((((((((((...........(((((((((((.........))))))))....)))...........)))))))))))))))
..))))))))))
SIMILARITIES| miRBase no hits PMRD ath-miRf11066-akr: 4e-59 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf11066-akr from PMRD (MNEST048166) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
