ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10173-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCACTCGACCCCCTGGTCGAGTA miRNA* CTCGACCCCCTGGTCGAGTAGACG mismatches: 6 bulges: 1 |
pre-miRNA
GGATCACCACTCGACCCCCTGGTCGAGTAGATGGCATCACCTCTTCTCACCACCACTCGACCCCCTGGTCGAGTAGACGACC
dot-bracket secondary structure
((.((..(((((((((....((((((((.(.(((...............)))).))))))))....)))))))).)..))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
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GGATCACCACTCGACCCCCTGGTCGAGTAGATGGCATCACCTCTTCTCACCACCACTCGACCCCCTGGTCGAGTAGACGACC
dot-bracket secondary structure
((.((..(((((((((....((((((((.(.(((...............)))).))))))))....)))))))).)..))))
SIMILARITIES| miRBase no hits PMRD ath-miRf11082-akr: 2e-41 microPC no hits | UniProt no hits RFAM MIR854: 0.0003 |
Identical with: ath-miRf10494-akr from PMRD (MNEST047594) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
